HL_6SGC_020

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUCCA

Length

6 nucleotides

Bulged bases

6SGC|1|54|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_020 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1001

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6SGC|1|54|U|1177
6SGC|1|54|G|1178
6SGC|1|54|U|1179
6SGC|1|54|C|1180
6SGC|1|54|C|1183
6SGC|1|54|A|1184

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 74

5S ribosomal RNA; 5S rRNA

Chain D2

60S ribosomal protein L5

Chain I2

60S ribosomal protein L10