HL_6SGC_022
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUACGAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6SGC|1|54|A|1371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_022 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.251
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6SGC|1|54|C|1363
6SGC|1|54|U|1364
6SGC|1|54|A|1368
6SGC|1|54|C|1369
6SGC|1|54|G|1370
6SGC|1|54|A|1371
6SGC|1|54|A|1372
6SGC|1|54|A|1373
6SGC|1|54|G|1374
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain 84
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C2
- uL4
- Chain L2
- eL13
- Chain N2
- Ribosomal protein L15
- Chain Y2
- Ribosomal protein L26
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