3D structure

PDB id
6SGC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled on a poly(A) tail
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UGAAGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6SGC_023 not in the Motif Atlas
Homologous match to HL_8C3A_016
Geometric discrepancy: 0.0729
The information below is about HL_8C3A_016
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6SGC|1|54|U|1389
6SGC|1|54|G|1390
6SGC|1|54|A|1391
6SGC|1|54|A|1392
6SGC|1|54|G|1393
6SGC|1|54|G|1394

Current chains

Chain 54
28S ribosomal RNA

Nearby chains

Chain L2
eL13
Chain Q2
eL18
Chain a2
Ribosomal_L18e/L15P domain-containing protein
Chain i2
60S ribosomal protein L36

Coloring options:


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