HL_6SGC_025

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCCGCGCC

Length

8 nucleotides

Bulged bases

6SGC|1|54|C|1485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_025 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3322

The information below is about HL_5J7L_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6SGC|1|54|G|1479
6SGC|1|54|C|1480
6SGC|1|54|C|1481
6SGC|1|54|G|1482
6SGC|1|54|C|1483
6SGC|1|54|G|1484
6SGC|1|54|C|1485
6SGC|1|54|C|1486

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain L2

eL13

Chain i2

60S ribosomal protein L36