HL_6SGC_031

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGGUGUG

Length

8 nucleotides

Bulged bases

6SGC|1|54|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_031 not in the Motif Atlas

Geometric match to HL_3R4F_001

Geometric discrepancy: 0.3555

The information below is about HL_3R4F_001

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

6SGC|1|54|C|1816
6SGC|1|54|U|1817
6SGC|1|54|G|1818
6SGC|1|54|G|1819
6SGC|1|54|U|1820
6SGC|1|54|G|1821
6SGC|1|54|U|1822
6SGC|1|54|G|1823

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain D2

60S ribosomal protein L5

Chain T2

eL21

Chain b2

eL29