HL_6SGC_034

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGGCCAUGGAAGUCGGAAUC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|G|1973
6SGC|1|54|U|1974
6SGC|1|54|G|1975
6SGC|1|54|G|1976
6SGC|1|54|C|1977
6SGC|1|54|C|1978
6SGC|1|54|A|1979
6SGC|1|54|U|1980
6SGC|1|54|G|1981
6SGC|1|54|G|1982
6SGC|1|54|A|1983
6SGC|1|54|A|1984
6SGC|1|54|G|1985
6SGC|1|54|U|1986
6SGC|1|54|C|1987
6SGC|1|54|G|1988
6SGC|1|54|G|1989
6SGC|1|54|A|1990
6SGC|1|54|A|1991
6SGC|1|54|U|1992
6SGC|1|54|C|1993

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain s2

uL10

Chain t2

Ribosomal protein L12