HL_6SGC_036
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG
- Length
- 40 nucleotides
- Bulged bases
- 6SGC|1|54|C|2094, 6SGC|1|54|U|2267, 6SGC|1|54|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SGC|1|54|C|2087
6SGC|1|54|A|2088
6SGC|1|54|G|2089
6SGC|1|54|U|2090
6SGC|1|54|C|2091
6SGC|1|54|G|2092
6SGC|1|54|G|2093
6SGC|1|54|C|2094
6SGC|1|54|A|2095
6SGC|1|54|G|2096
6SGC|1|54|A|2097
6SGC|1|54|G|2098
6SGC|1|54|C|2099
6SGC|1|54|G|2100
6SGC|1|54|A|2101
6SGC|1|54|G|2102
6SGC|1|54|A|2103
6SGC|1|54|A|2104
6SGC|1|54|A|2105
6SGC|1|54|G|2106
6SGC|1|54|A|2107
6SGC|1|54|G|2108
6SGC|1|54|A|2109
6SGC|1|54|G|2110
6SGC|1|54|U|2111
6SGC|1|54|G|2112
6SGC|1|54|G|2113
6SGC|1|54|C|2258
6SGC|1|54|G|2259
6SGC|1|54|C|2260
6SGC|1|54|G|2261
6SGC|1|54|G|2262
6SGC|1|54|A|2263
6SGC|1|54|C|2264
6SGC|1|54|G|2265
6SGC|1|54|C|2266
6SGC|1|54|U|2267
6SGC|1|54|A|2268
6SGC|1|54|C|2269
6SGC|1|54|G|2270
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain C2
- uL4
- Chain E2
- 60S ribosomal protein L6
- Chain F2
- uL30
- Chain Q2
- eL18
- Chain b2
- eL29
- Chain r2
- Ribosomal_L28e domain-containing protein
Coloring options: