HL_6SGC_039

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

6SGC|1|54|G|2421, 6SGC|1|54|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_039 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1582

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

6SGC|1|54|A|2420
6SGC|1|54|G|2421
6SGC|1|54|C|2422
6SGC|1|54|A|2423
6SGC|1|54|G|2424
6SGC|1|54|U|2425
6SGC|1|54|U|2426

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain P2

uL22

Chain R2

eL19

Chain l2

eL39