HL_6SGC_040

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_040 not in the Motif Atlas

Homologous match to HL_5TBW_033

Geometric discrepancy: 0.1799

The information below is about HL_5TBW_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SGC|1|54|C|2458
6SGC|1|54|G|2459
6SGC|1|54|A|2460
6SGC|1|54|G|2461
6SGC|1|54|C|2462
6SGC|1|54|G|2463

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain N2

Ribosomal protein L15

Chain j2

Ribosomal protein L37