HL_6SGC_042

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

6SGC|1|54|U|2530, 6SGC|1|54|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_042 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.1119

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6SGC|1|54|G|2523
6SGC|1|54|U|2524
6SGC|1|54|U|2525
6SGC|1|54|C|2526
6SGC|1|54|A|2527
6SGC|1|54|G|2528
6SGC|1|54|A|2529
6SGC|1|54|U|2530
6SGC|1|54|C|2531
6SGC|1|54|C|2532

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain R2

eL19

Chain X2

Ribosomal_L23eN domain-containing protein

Chain g2

eL34