HL_6SGC_044

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_044 not in the Motif Atlas

Homologous match to HL_5TBW_036

Geometric discrepancy: 0.0869

The information below is about HL_5TBW_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SGC|1|54|G|2578
6SGC|1|54|G|2579
6SGC|1|54|U|2580
6SGC|1|54|A|2581
6SGC|1|54|A|2582
6SGC|1|54|C|2583

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain Z2

60S ribosomal protein L27

Chain g2

eL34