HL_6SGC_045

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

6SGC|1|54|U|2631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_045 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1774

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6SGC|1|54|G|2624
6SGC|1|54|U|2625
6SGC|1|54|U|2626
6SGC|1|54|C|2627
6SGC|1|54|U|2628
6SGC|1|54|C|2629
6SGC|1|54|U|2630
6SGC|1|54|U|2631
6SGC|1|54|U|2632

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain R2

eL19

Chain U2

eL22