HL_6SGC_048

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

6SGC|1|54|C|2739

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_048 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.104

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

6SGC|1|54|C|2738
6SGC|1|54|C|2739
6SGC|1|54|U|2740
6SGC|1|54|U|2741
6SGC|1|54|G|2742

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A2

Ribosomal protein L8

Chain p2

eL43