HL_6SGC_056
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AGAAAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_056 not in the Motif Atlas
- Homologous match to HL_5TBW_048
- Geometric discrepancy: 0.0962
- The information below is about HL_5TBW_048
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
6SGC|1|54|A|3724
6SGC|1|54|G|3725
6SGC|1|54|A|3726
6SGC|1|54|A|3727
6SGC|1|54|A|3728
6SGC|1|54|U|3729
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain 33
- Transfer RNA; tRNA
- Chain B
- Ribosomal protein
- Chain i2
- 60S ribosomal protein L36
- Chain o2
- eL42
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