HL_6SGC_061

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCGAGCCGGGCUCU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|G|4095
6SGC|1|54|C|4096
6SGC|1|54|G|4097
6SGC|1|54|A|4098
6SGC|1|54|G|4099
6SGC|1|54|C|4100
6SGC|1|54|C|4101
6SGC|1|54|G|4107
6SGC|1|54|G|4108
6SGC|1|54|G|4109
6SGC|1|54|C|4110
6SGC|1|54|U|4111
6SGC|1|54|C|4112
6SGC|1|54|U|4113

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain A2

Ribosomal protein L8

Chain C1

40S ribosomal protein S3a

Chain G2

eL8

Chain g2

eL34