HL_6SGC_063

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6SGC|1|54|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_063 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1093

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6SGC|1|54|C|4193
6SGC|1|54|U|4194
6SGC|1|54|G|4195
6SGC|1|54|G|4196
6SGC|1|54|G|4197
6SGC|1|54|G|4198
6SGC|1|54|C|4199
6SGC|1|54|G|4200
6SGC|1|54|G|4201

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain I2

60S ribosomal protein L10

Chain b2

eL29