HL_6SGC_065

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_065 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.1647

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6SGC|1|54|G|4250
6SGC|1|54|A|4251
6SGC|1|54|C|4252
6SGC|1|54|A|4253
6SGC|1|54|G|4254
6SGC|1|54|A|4255
6SGC|1|54|A|4256
6SGC|1|54|A|4257
6SGC|1|54|C|4258

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain J2

Ribosomal protein L11