HL_6SGC_066

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_066 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.0962

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6SGC|1|54|C|4270
6SGC|1|54|A|4271
6SGC|1|54|G|4272
6SGC|1|54|A|4273
6SGC|1|54|A|4274
6SGC|1|54|G|4275
6SGC|1|54|G|4276
6SGC|1|54|G|4277

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain I2

60S ribosomal protein L10

Chain T2

eL21