HL_6SGC_068

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_068 not in the Motif Atlas

Homologous match to HL_5TBW_059

Geometric discrepancy: 0.0804

The information below is about HL_5TBW_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SGC|1|54|U|4321
6SGC|1|54|G|4322
6SGC|1|54|A|4323
6SGC|1|54|A|4324
6SGC|1|54|A|4325
6SGC|1|54|G|4326

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain D2

60S ribosomal protein L5

Chain T2

eL21

Chain o2

eL42