HL_6SGC_069
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUUGGGUUUUA
- Length
- 11 nucleotides
- Bulged bases
- 6SGC|1|54|U|4354
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_069 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.2754
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6SGC|1|54|U|4352
6SGC|1|54|U|4353
6SGC|1|54|U|4354
6SGC|1|54|G|4355
6SGC|1|54|G|4356
6SGC|1|54|G|4357
6SGC|1|54|U|4358
6SGC|1|54|U|4359
6SGC|1|54|U|4360
6SGC|1|54|U|4361
6SGC|1|54|A|4362
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain L2
- eL13
- Chain a2
- Ribosomal_L18e/L15P domain-containing protein
- Chain i2
- 60S ribosomal protein L36
- Chain o2
- eL42
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