HL_6SGC_072

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_072 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.0756

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6SGC|1|54|U|4497
6SGC|1|54|U|4498
6SGC|1|54|G|4499
6SGC|1|54|U|4500
6SGC|1|54|U|4501
6SGC|1|54|C|4502
6SGC|1|54|A|4503

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3