HL_6SGC_074

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_074 not in the Motif Atlas

Homologous match to HL_5TBW_065

Geometric discrepancy: 0.0992

The information below is about HL_5TBW_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SGC|1|54|C|4603
6SGC|1|54|G|4604
6SGC|1|54|A|4605
6SGC|1|54|G|4606
6SGC|1|54|A|4607
6SGC|1|54|G|4608

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain H2

uL6

Chain V2

Ribosomal protein L23

Chain m2

eL40