HL_6SGC_076

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6SGC|1|54|G|4694, 6SGC|1|54|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_076 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0612

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6SGC|1|54|C|4688
6SGC|1|54|U|4689
6SGC|1|54|G|4690
6SGC|1|54|A|4691
6SGC|1|54|A|4692
6SGC|1|54|C|4693
6SGC|1|54|G|4694
6SGC|1|54|C|4695
6SGC|1|54|C|4696
6SGC|1|54|U|4697
6SGC|1|54|C|4698
6SGC|1|54|U|4699
6SGC|1|54|A|4700
6SGC|1|54|A|4701
6SGC|1|54|G|4702

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain H2

uL6

Chain O2

uL13

Chain m2

eL40