HL_6SGC_078

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

6SGC|1|54|A|4910, 6SGC|1|54|A|4911, 6SGC|1|54|G|4914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_078 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2142

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6SGC|1|54|C|4906
6SGC|1|54|G|4907
6SGC|1|54|G|4908
6SGC|1|54|A|4909
6SGC|1|54|A|4910
6SGC|1|54|A|4911
6SGC|1|54|G|4912
6SGC|1|54|G|4913
6SGC|1|54|G|4914
6SGC|1|54|G|4915

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain O2

uL13