HL_6SGC_079

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

6SGC|1|54|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_079 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1146

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6SGC|1|54|G|4975
6SGC|1|54|U|4976
6SGC|1|54|A|4977
6SGC|1|54|G|4978
6SGC|1|54|A|4979
6SGC|1|54|C|4980
6SGC|1|54|G|4981
6SGC|1|54|A|4982
6SGC|1|54|C|4983

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain B2

uL3

Chain P2

uL22