HL_6SGC_084

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGAAUUGCAGGUUGAUC

Length

18 nucleotides

Bulged bases

6SGC|1|84|U|86

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|84|G|68
6SGC|1|84|U|69
6SGC|1|84|G|70
6SGC|1|84|A|71
6SGC|1|84|A|72
6SGC|1|84|U|73
6SGC|1|84|U|74
6SGC|1|84|G|75
6SGC|1|84|C|76
6SGC|1|84|A|77
6SGC|1|84|G|78
6SGC|1|84|G|79
6SGC|1|84|U|85
6SGC|1|84|U|86
6SGC|1|84|G|87
6SGC|1|84|A|88
6SGC|1|84|U|89
6SGC|1|84|C|90

Current chains

Chain 84

5.8S ribosomal RNA

Nearby chains

Chain 54

Large subunit ribosomal RNA; LSU rRNA

Chain Y2

Ribosomal protein L26

Chain h2

uL29

Chain j2

Ribosomal protein L37

Chain l2

eL39