HL_6SGC_093

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|A1|G|377
6SGC|1|A1|U|378
6SGC|1|A1|C|379
6SGC|1|A1|G|380
6SGC|1|A1|C|381
6SGC|1|A1|C|382
6SGC|1|A1|G|383
6SGC|1|A1|U|384
6SGC|1|A1|G|385
6SGC|1|A1|C|386
6SGC|1|A1|C|387

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain J1

40S ribosomal protein S8

Chain M1

Ribosomal protein S11