HL_6SGC_099
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACUUUAAAUCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_099 not in the Motif Atlas
- Homologous match to HL_4V88_199
- Geometric discrepancy: 0.1441
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6SGC|1|A1|A|569
6SGC|1|A1|C|570
6SGC|1|A1|U|571
6SGC|1|A1|U|572
6SGC|1|A1|U|573
6SGC|1|A1|A|574
6SGC|1|A1|A|575
6SGC|1|A1|A|576
6SGC|1|A1|U|577
6SGC|1|A1|C|578
6SGC|1|A1|C|579
6SGC|1|A1|U|580
6SGC|1|A1|U|581
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain F1
- 40S ribosomal protein S4
- Chain K1
- Ribosomal protein S9 (Predicted)
- Chain Z1
- eS24
Coloring options: