HL_6SGC_102

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6SGC|1|A1|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_102 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.0992

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6SGC|1|A1|U|820
6SGC|1|A1|G|821
6SGC|1|A1|U|822
6SGC|1|A1|U|823
6SGC|1|A1|C|824
6SGC|1|A1|A|825
6SGC|1|A1|A|826
6SGC|1|A1|A|827
6SGC|1|A1|G|828

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain F1

40S ribosomal protein S4

Chain K1

Ribosomal protein S9 (Predicted)

Chain Z1

eS24