HL_6SGC_104
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAUUUUGUUGGUUUUCGG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_104 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.2367
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6SGC|1|A1|C|884
6SGC|1|A1|U|885
6SGC|1|A1|A|886
6SGC|1|A1|U|887
6SGC|1|A1|U|888
6SGC|1|A1|U|889
6SGC|1|A1|U|890
6SGC|1|A1|G|891
6SGC|1|A1|U|892
6SGC|1|A1|U|893
6SGC|1|A1|G|894
6SGC|1|A1|G|895
6SGC|1|A1|U|896
6SGC|1|A1|U|897
6SGC|1|A1|U|898
6SGC|1|A1|U|899
6SGC|1|A1|C|900
6SGC|1|A1|G|901
6SGC|1|A1|G|902
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain H1
- 40S ribosomal protein S6
- Chain M1
- Ribosomal protein S11
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