HL_6SGC_106

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_106 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.0812

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6SGC|1|A1|C|994
6SGC|1|A1|G|995
6SGC|1|A1|A|996
6SGC|1|A1|A|997
6SGC|1|A1|A|998
6SGC|1|A1|G|999

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain O1

Ribosomal_S13_N domain-containing protein

Chain b1

eS26