HL_6SGC_116

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SGC_116 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.3572

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6SGC|1|A1|C|1460
6SGC|1|A1|G|1461
6SGC|1|A1|U|1462
6SGC|1|A1|U|1463
6SGC|1|A1|C|1464
6SGC|1|A1|A|1465
6SGC|1|A1|G|1466

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain S1

eS17

Chain h1

WD_REPEATS_REGION domain-containing protein