HL_6SGC_119
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 6SGC|1|A1|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_119 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.3066
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6SGC|1|A1|G|1658
6SGC|1|A1|U|1659
6SGC|1|A1|C|1660
6SGC|1|A1|A|1661
6SGC|1|A1|U|1662
6SGC|1|A1|A|1663
6SGC|1|A1|A|1664
6SGC|1|A1|G|1665
6SGC|1|A1|C|1666
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain R1
- Ribosomal protein S16
- Chain U1
- eS19
- Chain V1
- Ribosomal_S10 domain-containing protein
- Chain e1
- uS14
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