HL_6SGC_120

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGGGUGCCCUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|A1|C|1756
6SGC|1|A1|G|1757
6SGC|1|A1|G|1758
6SGC|1|A1|G|1759
6SGC|1|A1|G|1760
6SGC|1|A1|U|1761
6SGC|1|A1|G|1771
6SGC|1|A1|C|1772
6SGC|1|A1|C|1773
6SGC|1|A1|C|1774
6SGC|1|A1|U|1775
6SGC|1|A1|G|1776

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain H1

40S ribosomal protein S6

Chain W2

TRASH domain-containing protein