HL_6SGC_122
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACU(70U)UU(12A)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 70U, 12A, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SGC_122 not in the Motif Atlas
- Homologous match to HL_1FIR_005
- Geometric discrepancy: 0.1416
- The information below is about HL_1FIR_005
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
6SGC|1|23|A|31
6SGC|1|23|C|32
6SGC|1|23|U|33
6SGC|1|23|70U|34
6SGC|1|23|U|35
6SGC|1|23|U|36
6SGC|1|23|12A|37
6SGC|1|23|A|38
6SGC|1|23|PSU|39
Current chains
- Chain 23
- tRNA (Lys3)
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain Q1
- uS19
- Chain R1
- Ribosomal protein S16
- Chain i1
- polyA mRNA
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