HL_6SGC_128

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

6SGC|1|A1|U|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|A1|U|885
6SGC|1|A1|A|886
6SGC|1|A1|U|887
6SGC|1|A1|U|888
6SGC|1|A1|U|889
6SGC|1|A1|U|890
6SGC|1|A1|G|891
6SGC|1|A1|U|892
6SGC|1|A1|U|893
6SGC|1|A1|G|894
6SGC|1|A1|G|895
6SGC|1|A1|U|896
6SGC|1|A1|U|897
6SGC|1|A1|U|898
6SGC|1|A1|U|899
6SGC|1|A1|C|900
6SGC|1|A1|G|901

Current chains

Chain A1

18S ribosomal RNA

Nearby chains

Chain H1

40S ribosomal protein S6