HL_6SJ6_014

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6SJ6|1|A|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SJ6_014 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.2709

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6SJ6|1|A|G|456
6SJ6|1|A|G|457
6SJ6|1|A|A|458
6SJ6|1|A|C|459
6SJ6|1|A|C|460
6SJ6|1|A|A|461
6SJ6|1|A|U|462
6SJ6|1|A|C|463

Current chains

Chain A

23S ribosomal RNA

Nearby chains