6SJ6 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_6SJ6_001 | 1/A/67:74 | No text annotation | geometric HL_4WF9_001 HL_86769.4 | |
HL_6SJ6_002 | 1/A/87:95 | No text annotation | geometric HL_5TBW_004 NA | |
HL_6SJ6_003 | 1/A/122:127 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
HL_6SJ6_004 | 1/A/135:144 | No text annotation | geometric HL_5TBW_028 NA | |
HL_6SJ6_075 | 1/A/155:173 | No text annotation | ||
HL_6SJ6_006 | 1/A/190:212 | No text annotation | ||
HL_6SJ6_065 | 1/A/241:262 | No text annotation | ||
HL_6SJ6_008 | 1/A/249:255 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
HL_6SJ6_009 | 1/A/283:288 | No text annotation | ||
HL_6SJ6_076 | 1/A/348:355 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_010 HL_01609.3 | |
HL_6SJ6_011 | 1/A/362:366 | No text annotation | homologous HL_7RQB_011 NA | |
HL_6SJ6_012 | 1/A/370:378 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
HL_6SJ6_077 | 1/A/428:438 | No text annotation | ||
HL_6SJ6_014 | 1/A/456:463 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
HL_6SJ6_015 | 1/A/508:513 | GNRA | homologous HL_4WF9_015 HL_37824.8 | |
HL_6SJ6_016 | 1/A/533:538 | GNRA | homologous HL_7RQB_016 NA | |
HL_6SJ6_017 | 1/A/587:594 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
HL_6SJ6_018 | 1/A/609:618 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_018 HL_28252.9 | |
HL_6SJ6_019 | 1/A/655:661 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
HL_6SJ6_020 | 1/A/674:679 | GNRA | homologous HL_7RQB_020 NA | |
HL_6SJ6_022 | 1/A/789:798 | No text annotation | homologous HL_4WF9_023 HL_88205.2 | |
HL_6SJ6_023 | 1/A/824:830 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
HL_6SJ6_024 | 1/A/871:876 | No text annotation | homologous HL_7A0S_024 HL_55195.3 | |
HL_6SJ6_026 | 1/A/999:1006 | GNRA | homologous HL_7RQB_027 NA | |
HL_6SJ6_027 | 1/A/1022:1029 | No text annotation | homologous HL_5J7L_160 HL_42998.2 | |
HL_6SJ6_067 | 1/A/1214:1218 | Mini UNCG | geometric HL_4LFB_005 HL_48778.2 | |
HL_6SJ6_030 | 1/A/1260:1265 | GNRA | homologous HL_4WF9_031 HL_37824.8 | |
HL_6SJ6_031 | 1/A/1318:1326 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_28252.9 | |
HL_6SJ6_032 | 1/A/1361:1367 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_57176.2 | |
HL_6SJ6_033 | 1/A/1400:1405 | GNRA | homologous HL_7RQB_035 NA | |
HL_6SJ6_034 | 1/A/1425:1436 | No text annotation | ||
HL_6SJ6_036 | 1/A/1656:1663 | No text annotation | homologous HL_7RQB_040 NA | |
HL_6SJ6_037 | 1/A/1673:1681 | GNRA with extra cWW | homologous HL_4WF9_039 HL_20167.2 | |
HL_6SJ6_038 | 1/A/1735:1740 | No text annotation | homologous HL_7RQB_042 NA | |
HL_6SJ6_039 | 1/A/1760:1769 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
HL_6SJ6_040 | 1/A/1779:1783 | No text annotation | homologous HL_7RQB_044 NA | |
HL_6SJ6_041 | 1/A/1804:1814 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
HL_6SJ6_068 | 1/A/1825:1848 | No text annotation | ||
HL_6SJ6_042 | 1/A/1833:1838 | GNRA | homologous HL_7RQB_046 NA | |
HL_6SJ6_069 | 1/A/1976:1984 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
HL_6SJ6_045 | 1/A/2054:2063 | No text annotation | homologous HL_4WF9_047 HL_61996.3 | |
HL_6SJ6_048 | 1/A/2275:2283 | No text annotation | homologous HL_5J7L_186 HL_85367.2 | |
HL_6SJ6_049 | 1/A/2291:2303 | No text annotation | homologous HL_4WF9_050 HL_91939.2 | |
HL_6SJ6_050 | 1/A/2350:2359 | No text annotation | geometric HL_6JXM_002 HL_31585.4 | |
HL_6SJ6_051 | 1/A/2382:2389 | GNRA with extra cWW | homologous HL_4WF9_053 HL_04259.3 | |
HL_6SJ6_078 | 1/A/2401:2406 | No text annotation | ||
HL_6SJ6_053 | 1/A/2431:2440 | No text annotation | homologous HL_7A0S_058 HL_53454.2 | |
HL_6SJ6_054 | 1/A/2498:2506 | No text annotation | geometric HL_5TBW_012 NA | |
HL_6SJ6_055 | 1/A/2554:2563 | No text annotation | geometric HL_7RQB_068 NA | |
HL_6SJ6_056 | 1/A/2578:2584 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
HL_6SJ6_057 | 1/A/2621:2626 | GNRA | homologous HL_5J7L_196 HL_37824.8 | |
HL_6SJ6_058 | 1/A/2685:2690 | GNRA | homologous HL_7RQB_064 NA | |
HL_6SJ6_059 | 1/A/2727:2734 | No text annotation | ||
HL_6SJ6_071 | 1/A/2764:2794 | No text annotation | ||
HL_6SJ6_060 | 1/A/2769:2789 | No text annotation | ||
HL_6SJ6_072 | 1/A/2839:2847 | No text annotation | homologous HL_4WF9_064 HL_64690.6 | |
HL_6SJ6_073 | 1/A/2867:2889 | No text annotation | ||
HL_6SJ6_062 | 1/A/2874:2883 | No text annotation | geometric HL_8KAL_008 NA | |
HL_6SJ6_074 | 1/B/82:90 | No text annotation | ||
HL_6SJ6_064 | 1/B/83:88 | No text annotation | geometric HL_5TBW_002 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_6SJ6_005 | No text annotation | ||
HL_6SJ6_007 | No text annotation | ||
HL_6SJ6_010 | No text annotation | ||
HL_6SJ6_066 | No text annotation | ||
HL_6SJ6_013 | No text annotation | ||
HL_6SJ6_021 | No text annotation | ||
HL_6SJ6_025 | No text annotation | ||
HL_6SJ6_028 | No text annotation | ||
HL_6SJ6_029 | No text annotation | ||
HL_6SJ6_035 | No text annotation | ||
HL_6SJ6_043 | No text annotation | ||
HL_6SJ6_044 | No text annotation | ||
HL_6SJ6_046 | No text annotation | ||
HL_6SJ6_047 | No text annotation | ||
HL_6SJ6_052 | No text annotation | ||
HL_6SJ6_070 | No text annotation | ||
HL_6SJ6_061 | No text annotation | ||
HL_6SJ6_063 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_6SJ6_114 | 1/A/7:9, 1/A/2914:2915 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
IL_6SJ6_001 | 1/A/24:30, 1/A/555:561 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_04021.2 | |
IL_6SJ6_002 | 1/A/36:37, 1/A/488:490 | Single bulged A | homologous IL_7A0S_002 IL_31462.7 | |
IL_6SJ6_086 | 1/A/42:44, 1/A/480:483 | Minor groove platform with extra cWW | homologous IL_4WF9_003 IL_90351.1 | |
IL_6SJ6_087 | 1/A/56:76, 1/A/109:113 | No text annotation | ||
IL_6SJ6_088 | 1/A/81:85, 1/A/97:104 | No text annotation | homologous IL_9DFE_004 IL_01488.3 | |
IL_6SJ6_005 | 1/A/152:153, 1/A/175:177 | Major groove platform | geometric IL_4WF9_078 IL_48076.6 | |
IL_6SJ6_115 | 1/A/186:187, 1/A/215:217 | Single stack bend | homologous IL_5J7L_249 IL_90729.1 | |
IL_6SJ6_007 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_04346.10 | |
IL_6SJ6_116 | 1/A/305:331, 1/A/395:412 | No text annotation | ||
IL_6SJ6_117 | 1/A/336:338, 1/A/386:390 | No text annotation | homologous IL_9DFE_011 IL_69440.3 | |
IL_6SJ6_009 | 1/A/527:530, 1/A/541:554 | No text annotation | homologous IL_4WF9_015 IL_81516.2 | |
IL_6SJ6_010 | 1/A/581:584, 1/A/597:600 | Double sheared | homologous IL_4WF9_016 IL_09705.15 | |
IL_6SJ6_011 | 1/A/607:609, 1/A/618:620 | Isolated non-canonical cWW pair | homologous IL_7A0S_011 IL_07785.1 | |
IL_6SJ6_012 | 1/A/638:640, 1/A/704:707 | Isolated non-canonical cWW pair | homologous IL_4WF9_018 IL_07785.1 | |
IL_6SJ6_013 | 1/A/649:653, 1/A/663:667 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
IL_6SJ6_014 | 1/A/717:719, 1/A/851:853 | Isolated non-canonical cWW pair | geometric IL_5J7L_259 IL_87907.2 | |
IL_6SJ6_015 | 1/A/719:723, 1/A/844:851 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_54041.2 | |
IL_6SJ6_016 | 1/A/742:743, 1/A/808:810 | Single bulged A | homologous IL_5J7L_261 IL_31462.7 | |
IL_6SJ6_017 | 1/A/746:753, 1/A/768:776 | No text annotation | ||
IL_6SJ6_018 | 1/A/783:785, 1/A/802:803 | Major groove platform | homologous IL_4WF9_026 IL_48076.6 | |
IL_6SJ6_019 | 1/A/820:822, 1/A/832:836 | Multiple bulged bases | geometric IL_4V9F_030 IL_57881.1 | |
IL_6SJ6_020 | 1/A/882:883, 1/A/984:986 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
IL_6SJ6_118 | 1/A/888:894, 1/A/974:979 | No text annotation | ||
IL_6SJ6_022 | 1/A/897:898, 1/A/969:971 | No text annotation | ||
IL_6SJ6_023 | 1/A/901:907, 1/A/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4WF9_031 IL_29198.2 | |
IL_6SJ6_119 | 1/A/901:908, 1/A/958:966 | No text annotation | ||
IL_6SJ6_024 | 1/A/907:909, 1/A/957:960 | No text annotation | ||
IL_6SJ6_025 | 1/A/909:915, 1/A/952:957 | No text annotation | ||
IL_6SJ6_026 | 1/A/1038:1040, 1/A/1203:1204 | Single bulged C | homologous IL_7RQB_035 NA | |
IL_6SJ6_027 | 1/A/1042:1046, 1/A/1197:1201 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
IL_6SJ6_028 | 1/A/1048:1055, 1/A/1194:1195 | SSU/LSU pseudoknot | homologous IL_4WF9_037 IL_41203.4 | |
IL_6SJ6_029 | 1/A/1055:1057, 1/A/1193:1194 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
IL_6SJ6_097 | 1/A/1055:1068, 1/A/1184:1194 | No text annotation | ||
IL_6SJ6_030 | 1/A/1061:1068, 1/A/1184:1189 | No text annotation | ||
IL_6SJ6_031 | 1/A/1068:1074, 1/A/1168:1184 | No text annotation | geometric IL_4WF9_040 IL_50715.3 | |
IL_6SJ6_098 | 1/A/1068:1086, 1/A/1157:1184 | No text annotation | ||
IL_6SJ6_099 | 1/A/1235:1237, 1/A/1285:1288 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.3 | |
IL_6SJ6_033 | 1/A/1243:1245, 1/A/1277:1279 | Isolated cWH basepair | homologous IL_4WF9_045 IL_10167.6 | |
IL_6SJ6_034 | 1/A/1246:1253, 1/A/1272:1276 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
IL_6SJ6_035 | 1/A/1257:1259, 1/A/1266:1268 | Intercalated cWW | homologous IL_4WF9_047 IL_31737.3 | |
IL_6SJ6_036 | 1/A/1300:1307, 1/A/2038:2044 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
IL_6SJ6_037 | 1/A/1347:1350, 1/A/1647:1648 | Major groove platform; stack outside cWW | homologous IL_4WF9_049 IL_50694.7 | |
IL_6SJ6_038 | 1/A/1356:1360, 1/A/1368:1370 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_83150.2 | |
IL_6SJ6_039 | 1/A/1388:1392, 1/A/1413:1417 | UAA/GAN | homologous IL_4WF9_051 IL_89021.2 | |
IL_6SJ6_100 | 1/A/1388:1398, 1/A/1407:1417 | No text annotation | ||
IL_6SJ6_040 | 1/A/1393:1398, 1/A/1407:1412 | No text annotation | geometric IL_8ZA4_001 IL_76308.6 | |
IL_6SJ6_120 | 1/A/1445:1460, 1/A/1628:1638 | No text annotation | ||
IL_6SJ6_121 | 1/A/1461:1466, 1/A/1623:1627 | Triple sheared | geometric IL_1U6B_002 IL_17948.2 | |
IL_6SJ6_122 | 1/A/1695:1700, 1/A/2031:2033 | No text annotation | homologous IL_4WF9_062 IL_12566.4 | |
IL_6SJ6_043 | 1/A/1707:1709, 1/A/2022:2024 | Isolated tWW turn | homologous IL_7A0S_060 IL_67095.2 | |
IL_6SJ6_044 | 1/A/1710:1713, 1/A/2020:2021 | Major groove platform; stack outside cWW | homologous IL_4WF9_064 IL_50694.7 | |
IL_6SJ6_045 | 1/A/1713:1718, 1/A/2017:2020 | Intercalated tWH | geometric IL_4WF9_065 IL_76758.2 | |
IL_6SJ6_046 | 1/A/1730:1735, 1/A/1740:1746 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_47346.2 | |
IL_6SJ6_123 | 1/A/1757:1759, 1/A/1770:1772 | No text annotation | ||
IL_6SJ6_048 | 1/A/1797:1798, 1/A/2007:2009 | Single bulged A | homologous IL_4WF9_068 IL_31462.7 | |
IL_6SJ6_049 | 1/A/1825:1831, 1/A/1840:1848 | Kink-turn related | homologous IL_7RQB_070 NA | |
IL_6SJ6_050 | 1/A/1960:1961, 1/A/1991:1994 | Multiple bulged bases | geometric IL_6IV9_001 IL_82107.5 | |
IL_6SJ6_051 | 1/A/1961:1975, 1/A/1985:1991 | No text annotation | ||
IL_6SJ6_052 | 1/A/2077:2079, 1/A/2644:2645 | Major groove platform | homologous IL_7RQB_078 NA | |
IL_6SJ6_053 | 1/A/2081:2083, 1/A/2639:2642 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
IL_6SJ6_054 | 1/A/2094:2096, 1/A/2469:2470 | Single bulged U | homologous IL_7RQB_080 NA | |
IL_6SJ6_102 | 1/A/2094:2098, 1/A/2465:2470 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_85033.2 | |
IL_6SJ6_055 | 1/A/2097:2099, 1/A/2464:2468 | No text annotation | geometric IL_4V8Q_188 NA | |
IL_6SJ6_056 | 1/A/2108:2110, 1/A/2263:2266 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
IL_6SJ6_057 | 1/A/2228:2231, 1/A/2247:2249 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_44465.1 | |
IL_6SJ6_058 | 1/A/2319:2350, 1/A/2359:2367 | No text annotation | ||
IL_6SJ6_059 | 1/A/2377:2380, 1/A/2391:2394 | Double sheared | homologous IL_4WF9_087 IL_09705.15 | |
IL_6SJ6_124 | 1/A/2426:2430, 1/A/2441:2444 | No text annotation | geometric IL_1GID_008 NA | |
IL_6SJ6_060 | 1/A/2428:2430, 1/A/2441:2442 | Single bulged U | homologous IL_4WF9_088 IL_89505.4 | |
IL_6SJ6_061 | 1/A/2480:2481, 1/A/2525:2527 | Single stack bend | homologous IL_4WF9_089 IL_26793.1 | |
IL_6SJ6_062 | 1/A/2481:2482, 1/A/2523:2525 | Major groove platform | geometric IL_4V9F_082 IL_48076.6 | |
IL_6SJ6_063 | 1/A/2484:2486, 1/A/2520:2521 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
IL_6SJ6_064 | 1/A/2486:2488, 1/A/2516:2520 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
IL_6SJ6_065 | 1/A/2493:2498, 1/A/2506:2511 | No text annotation | geometric IL_5TBW_026 NA | |
IL_6SJ6_066 | 1/A/2534:2536, 1/A/2606:2609 | Major groove platform with extra pair | geometric IL_7RQB_093 NA | |
IL_6SJ6_106 | 1/A/2534:2539, 1/A/2601:2609 | No text annotation | ||
IL_6SJ6_067 | 1/A/2537:2539, 1/A/2601:2605 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_07785.1 | |
IL_6SJ6_068 | 1/A/2539:2540, 1/A/2598:2601 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
IL_6SJ6_125 | 1/A/2549:2550, 1/A/2567:2570 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
IL_6SJ6_070 | 1/A/2618:2619, 1/A/2628:2630 | Major groove platform | geometric IL_7A0S_088 IL_07039.3 | |
IL_6SJ6_071 | 1/A/2663:2667, 1/A/2801:2809 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.3 | |
IL_6SJ6_072 | 1/A/2678:2685, 1/A/2690:2696 | No text annotation | ||
IL_6SJ6_073 | 1/A/2707:2711, 1/A/2752:2754 | C-loop | homologous IL_4WF9_101 IL_63596.11 | |
IL_6SJ6_074 | 1/A/2714:2718, 1/A/2745:2749 | No text annotation | homologous IL_4WF9_102 IL_23774.1 | |
IL_6SJ6_126 | 1/A/2722:2723, 1/A/2738:2741 | Multiple bulged bases | homologous IL_4WF9_103 IL_42626.2 | |
IL_6SJ6_076 | 1/A/2764:2769, 1/A/2789:2794 | UAA/GAN with extra cWW | geometric IL_4WF9_104 IL_49767.8 | |
IL_6SJ6_078 | 1/A/2858:2859, 1/A/2898:2900 | Single bulged C | homologous IL_7RQB_108 NA | |
IL_6SJ6_079 | 1/A/2863:2865, 1/A/2891:2894 | No text annotation | homologous IL_4WF9_107 IL_31531.3 | |
IL_6SJ6_080 | 1/A/2867:2874, 1/A/2883:2889 | No text annotation | ||
IL_6SJ6_081 | 1/B/21:27, 1/B/53:58 | No text annotation | ||
IL_6SJ6_082 | 1/B/28:30, 1/B/48:52 | No text annotation | homologous IL_4WF9_114 NA | |
IL_6SJ6_083 | 1/B/77:80, 1/B/91:94 | Tandem non-canonical cWW pairs | geometric IL_6JDV_002 IL_85033.2 | |
IL_6SJ6_113 | 1/B/78:82, 1/B/90:93 | No text annotation | ||
IL_6SJ6_084 | 1/B/80:82, 1/B/90:91 | Single stack bend | geometric IL_7KGA_003 IL_90729.1 | |
IL_6SJ6_085 | 1/B/82:83, 1/B/88:90 | Single base bend | geometric IL_5IBB_340 IL_90729.1 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_6SJ6_003 | No text annotation | ||
IL_6SJ6_004 | Kink-turn | ||
IL_6SJ6_089 | Other IL | ||
IL_6SJ6_006 | No text annotation | ||
IL_6SJ6_090 | No text annotation | ||
IL_6SJ6_008 | No text annotation | ||
IL_6SJ6_091 | No text annotation | ||
IL_6SJ6_092 | Tandem non-canonical cWW pairs | ||
IL_6SJ6_093 | Isolated non-canonical cWW pair | ||
IL_6SJ6_094 | No text annotation | ||
IL_6SJ6_095 | No text annotation | ||
IL_6SJ6_021 | No text annotation | ||
IL_6SJ6_096 | No text annotation | ||
IL_6SJ6_032 | Tandem non-canonical cWW pairs | ||
IL_6SJ6_101 | No text annotation | ||
IL_6SJ6_041 | tSH-tHW-tHS-cWW | ||
IL_6SJ6_042 | No text annotation | ||
IL_6SJ6_047 | No text annotation | ||
IL_6SJ6_103 | tSH-tHW-tHS | ||
IL_6SJ6_104 | Partly complementary | ||
IL_6SJ6_105 | No text annotation | ||
IL_6SJ6_107 | Isolated non-canonical cWW contact | ||
IL_6SJ6_069 | No text annotation | ||
IL_6SJ6_108 | No text annotation | ||
IL_6SJ6_109 | No text annotation | ||
IL_6SJ6_110 | No text annotation | ||
IL_6SJ6_075 | No text annotation | ||
IL_6SJ6_111 | No text annotation | ||
IL_6SJ6_077 | No text annotation | ||
IL_6SJ6_112 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_6SJ6_001 | 1/A/30:31, 1/A/520:527, 1/A/554:555 | No text annotation | homologous J3_7A0S_001 J3_60031.2 | |
J3_6SJ6_013 | 1/A/30:31, 1/A/520:530, 1/A/541:555 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
J3_6SJ6_014 | 1/A/32:35, 1/A/491:507, 1/A/514:519 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
J3_6SJ6_015 | 1/A/56:67, 1/A/74:76, 1/A/109:113 | No text annotation | homologous J3_4WF9_001 J3_47707.1 | |
J3_6SJ6_024 | 1/A/340:344, 1/A/359:368, 1/A/380:384 | No text annotation | homologous J3_4WF9_015 J3_46299.2 | |
J3_6SJ6_017 | 1/A/728:734, 1/A/818:820, 1/A/836:839 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
J3_6SJ6_004 | 1/A/743:745, 1/A/777:781, 1/A/805:808 | No text annotation | homologous J3_7RQB_005 NA | |
J3_6SJ6_018 | 1/A/1335:1340, 1/A/1669:1671, 1/A/1683:1686 | No text annotation | homologous J3_4WF9_004 J3_32852.6 | |
J3_6SJ6_025 | 1/A/1342:1346, 1/A/1649:1655, 1/A/1664:1667 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
J3_6SJ6_020 | 1/A/1347:1351, 1/A/1375:1382, 1/A/1645:1648 | No text annotation | ||
J3_6SJ6_007 | 1/A/1350:1351, 1/A/1375:1382, 1/A/1645:1647 | No text annotation | ||
J3_6SJ6_009 | 1/A/2118:2123, 1/A/2220:2228, 1/A/2249:2255 | No text annotation | ||
J3_6SJ6_021 | 1/A/2118:2122, 1/A/2221:2231, 1/A/2247:2255 | No text annotation | ||
J3_6SJ6_022 | 1/A/2309:2311, 1/A/2411:2422, 1/A/2448:2454 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
J3_6SJ6_011 | 1/A/2544:2547, 1/A/2572:2574, 1/A/2588:2594 | No text annotation | ||
J3_6SJ6_012 | 1/A/2831:2835, 1/A/2851:2856, 1/A/2902:2909 | No text annotation | ||
J4_6SJ6_009 | 1/A/640:653, 1/A/663:673, 1/A/680:683, 1/A/695:704 | No text annotation | ||
J4_6SJ6_002 | 1/A/1308:1313, 1/A/1331:1332, 1/A/1689:1692, 1/A/2036:2037 | No text annotation | homologous J4_4WF9_004 J4_64571.5 | |
J4_6SJ6_003 | 1/A/1385:1387, 1/A/1418:1422, 1/A/1439:1442, 1/A/1641:1642 | No text annotation | ||
J4_6SJ6_004 | 1/A/1710:1727, 1/A/1749:1751, 1/A/1778:1791, 1/A/2015:2021 | No text annotation | ||
J4_6SJ6_005 | 1/A/1713:1727, 1/A/1749:1751, 1/A/1778:1791, 1/A/2015:2020 | No text annotation | ||
J4_6SJ6_010 | 1/A/1799:1803, 1/A/1815:1819, 1/A/1854:1857, 1/A/2002:2006 | No text annotation | homologous J4_7A0S_008 J4_61477.5 | |
J4_6SJ6_007 | 1/A/2312:2350, 1/A/2359:2374, 1/A/2397:2399, 1/A/2408:2410 | No text annotation | ||
J4_6SJ6_008 | 1/A/2670:2673, 1/A/2701:2703, 1/A/2758:2762, 1/A/2796:2798 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
J5_6SJ6_007 | 1/A/47:54, 1/A/115:121, 1/A/128:130, 1/A/149:151, 1/A/178:180 | No text annotation | ||
J5_6SJ6_008 | 1/A/271:283, 1/A/288:302, 1/A/415:421, 1/A/445:453, 1/A/466:470 | No text annotation | ||
J5_6SJ6_003 | 1/A/576:578, 1/A/603:609, 1/A/618:622, 1/A/1299:1300, 1/A/2044:2045 | No text annotation | ||
J5_6SJ6_009 | 1/A/627:632, 1/A/713:716, 1/A/854:857, 1/A/1234:1235, 1/A/1288:1294 | No text annotation | homologous J5_4WF9_004 J5_74302.5 | |
J5_6SJ6_010 | 1/A/2084:2091, 1/A/2473:2481, 1/A/2525:2533, 1/A/2610:2615, 1/A/2633:2638 | No text annotation | ||
J5_6SJ6_006 | 1/A/2100:2104, 1/A/2270:2273, 1/A/2285:2286, 1/A/2308:2309, 1/A/2454:2463 | No text annotation | ||
J7_6SJ6_003 | 1/A/9:15, 1/A/570:576, 1/A/2045:2050, 1/A/2067:2070, 1/A/2652:2657, 1/A/2815:2816, 1/A/2913:2914 | No text annotation | ||
J7_6SJ6_002 | 1/A/862:867, 1/A/880:881, 1/A/987:990, 1/A/1015:1020, 1/A/1031:1035, 1/A/1207:1210, 1/A/1222:1229 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_6SJ6_002 | No text annotation | ||
J3_6SJ6_016 | No text annotation | ||
J3_6SJ6_003 | No text annotation | ||
J3_6SJ6_005 | No text annotation | ||
J3_6SJ6_019 | No text annotation | ||
J3_6SJ6_006 | No text annotation | ||
J3_6SJ6_008 | No text annotation | ||
J3_6SJ6_010 | No text annotation | ||
J3_6SJ6_023 | No text annotation | ||
J4_6SJ6_001 | No text annotation | ||
J4_6SJ6_006 | No text annotation | ||
J5_6SJ6_001 | No text annotation | ||
J5_6SJ6_002 | No text annotation | ||
J5_6SJ6_004 | No text annotation | ||
J5_6SJ6_005 | No text annotation | ||
J7_6SJ6_001 | No text annotation |
Coloring options: