HL_6SJ6_017

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

6SJ6|1|A|U|590, 6SJ6|1|A|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SJ6_017 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.215

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

6SJ6|1|A|C|587
6SJ6|1|A|G|588
6SJ6|1|A|U|589
6SJ6|1|A|U|590
6SJ6|1|A|A|591
6SJ6|1|A|A|592
6SJ6|1|A|U|593
6SJ6|1|A|G|594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L13

Chain U

50S ribosomal protein L21