HL_6SJ6_035

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CAGUAGGAUAGGCGAAGCGUGCGAUUGGAUUCGUUGAUUUCACACUG

Length

47 nucleotides

Bulged bases

6SJ6|1|A|A|1489, 6SJ6|1|A|G|1496, 6SJ6|1|A|A|1497, 6SJ6|1|A|U|1503, 6SJ6|1|A|U|1602

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SJ6|1|A|C|1474
6SJ6|1|A|A|1475
6SJ6|1|A|G|1476
6SJ6|1|A|U|1477
6SJ6|1|A|A|1478
6SJ6|1|A|G|1479
6SJ6|1|A|G|1480
6SJ6|1|A|A|1481
6SJ6|1|A|U|1482
6SJ6|1|A|A|1483
6SJ6|1|A|G|1484
6SJ6|1|A|G|1485
6SJ6|1|A|C|1486
6SJ6|1|A|G|1487
6SJ6|1|A|A|1488
6SJ6|1|A|A|1489
6SJ6|1|A|G|1490
6SJ6|1|A|C|1491
6SJ6|1|A|G|1492
6SJ6|1|A|U|1493
6SJ6|1|A|G|1494
6SJ6|1|A|C|1495
6SJ6|1|A|G|1496
6SJ6|1|A|A|1497
6SJ6|1|A|U|1498
6SJ6|1|A|U|1499
6SJ6|1|A|G|1500
6SJ6|1|A|G|1501
6SJ6|1|A|A|1502
6SJ6|1|A|U|1503
6SJ6|1|A|U|1504
6SJ6|1|A|C|1595
6SJ6|1|A|G|1596
6SJ6|1|A|U|1597
6SJ6|1|A|U|1598
6SJ6|1|A|G|1599
6SJ6|1|A|A|1600
6SJ6|1|A|U|1601
6SJ6|1|A|U|1602
6SJ6|1|A|U|1603
6SJ6|1|A|C|1604
6SJ6|1|A|A|1605
6SJ6|1|A|C|1606
6SJ6|1|A|A|1607
6SJ6|1|A|C|1608
6SJ6|1|A|U|1609
6SJ6|1|A|G|1610

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain Q

50S ribosomal protein L17