HL_6SJ6_037

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AUGAGAAUU

Length

9 nucleotides

Bulged bases

6SJ6|1|A|A|1678

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SJ6_037 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.1585

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6SJ6|1|A|A|1673
6SJ6|1|A|U|1674
6SJ6|1|A|G|1675
6SJ6|1|A|A|1676
6SJ6|1|A|G|1677
6SJ6|1|A|A|1678
6SJ6|1|A|A|1679
6SJ6|1|A|U|1680
6SJ6|1|A|U|1681

Current chains

Chain A

23S ribosomal RNA

Nearby chains