HL_6SJ6_045

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6SJ6|1|A|A|2057, 6SJ6|1|A|A|2058, 6SJ6|1|A|G|2059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SJ6_045 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1837

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

6SJ6|1|A|G|2054
6SJ6|1|A|U|2055
6SJ6|1|A|G|2056
6SJ6|1|A|A|2057
6SJ6|1|A|A|2058
6SJ6|1|A|G|2059
6SJ6|1|A|A|2060
6SJ6|1|A|U|2061
6SJ6|1|A|G|2062
6SJ6|1|A|C|2063

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain E

50S ribosomal protein L3