HL_6SJ6_048

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6SJ6|1|A|G|2277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SJ6_048 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.1702

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

6SJ6|1|A|C|2275
6SJ6|1|A|U|2276
6SJ6|1|A|G|2277
6SJ6|1|A|G|2278
6SJ6|1|A|G|2279
6SJ6|1|A|G|2280
6SJ6|1|A|C|2281
6SJ6|1|A|G|2282
6SJ6|1|A|G|2283

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27