HL_6SJ6_055

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUGUAGUCGG

Length

10 nucleotides

Bulged bases

6SJ6|1|A|G|2556

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SJ6_055 not in the Motif Atlas

Geometric match to HL_7RQB_068

Geometric discrepancy: 0.3731

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6SJ6|1|A|C|2554
6SJ6|1|A|U|2555
6SJ6|1|A|G|2556
6SJ6|1|A|U|2557
6SJ6|1|A|A|2558
6SJ6|1|A|G|2559
6SJ6|1|A|U|2560
6SJ6|1|A|C|2561
6SJ6|1|A|G|2562
6SJ6|1|A|G|2563

Current chains

Chain A

23S ribosomal RNA

Nearby chains