HL_6SJ6_062

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AUGGUGACAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SJ6_062 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3315

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6SJ6|1|A|A|2874
6SJ6|1|A|U|2875
6SJ6|1|A|G|2876
6SJ6|1|A|G|2877
6SJ6|1|A|U|2878
6SJ6|1|A|G|2879
6SJ6|1|A|A|2880
6SJ6|1|A|C|2881
6SJ6|1|A|A|2882
6SJ6|1|A|U|2883

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L19