HL_6SKF_020

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GAU(5MU)(LV2)AACGC

Length

10 nucleotides

Bulged bases

6SKF|1|Aa|A|919, 6SKF|1|Aa|G|922

QA status

Modified nucleotides: 5MU, LV2

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|G|914
6SKF|1|Aa|A|915
6SKF|1|Aa|U|916
6SKF|1|Aa|5MU|917
6SKF|1|Aa|LV2|918
6SKF|1|Aa|A|919
6SKF|1|Aa|A|920
6SKF|1|Aa|C|921
6SKF|1|Aa|G|922
6SKF|1|Aa|C|923

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain Al

30S ribosomal protein S9

Chain Am

30S ribosomal protein S10

Chain Ar

30S ribosomal protein S14 type Z