RNA 3D Hub //

6SKF Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6SKF_0011/Aa/7:17No text annotation
HL_6SKF_1011/Aa/138:143No text annotation
HL_6SKF_0031/Aa/173:180No text annotation
HL_6SKF_0051/Aa/247:255No text annotation
HL_6SKF_0061/Aa/284:289No text annotation
HL_6SKF_0071/Aa/308:321No text annotation
HL_6SKF_0081/Aa/330:335No text annotation
HL_6SKF_0091/Aa/367:372No text annotation
HL_6SKF_0111/Aa/423:431No text annotation
HL_6SKF_0121/Aa/467:472No text annotation
HL_6SKF_0131/Aa/562:568No text annotation
HL_6SKF_0141/Aa/635:644No text annotation
HL_6SKF_1021/Aa/672:677No text annotation
HL_6SKF_0161/Aa/732:742No text annotation
HL_6SKF_0171/Aa/788:794No text annotation
HL_6SKF_0181/Aa/812:817No text annotation
HL_6SKF_1031/Aa/847:852No text annotation
HL_6SKF_0201/Aa/914:923No text annotation
HL_6SKF_0211/Aa/964:970No text annotation
HL_6SKF_1041/Aa/1020:1025No text annotation
HL_6SKF_0221/Aa/1033:1040No text annotation
HL_6SKF_0231/Aa/1083:1087No text annotation
HL_6SKF_0241/Aa/1117:1123No text annotation
HL_6SKF_1051/Aa/1217:1222No text annotation
HL_6SKF_1061/Aa/1266:1275No text annotation
HL_6SKF_0271/Aa/1309:1317No text annotation
HL_6SKF_1071/Aa/1399:1402No text annotation
HL_6SKF_0291/Aa/1464:1469No text annotation
HL_6SKF_0301/BA/68:77Pseudoknot with intercalation
homologous
HL_4V9F_001
HL_17803.1
HL_6SKF_0311/BA/96:104Pseudoknot geometry
homologous
HL_4V9F_002
HL_52651.2
HL_6SKF_0321/BA/131:136No text annotation
homologous
HL_4V9F_003
HL_75660.8
HL_6SKF_0341/BA/158:163No text annotation
homologous
HL_4V9F_005
HL_13184.2
HL_6SKF_0351/BA/185:192No text annotation
geometric
HL_7RQB_006
NA
HL_6SKF_0361/BA/216:221No text annotation
geometric
HL_4WF9_007
HL_51020.2
HL_6SKF_0371/BA/237:243No text annotation
homologous
HL_4V9F_008
HL_76371.2
HL_6SKF_0381/BA/277:282GNRA
homologous
HL_4V9F_009
HL_34789.4
HL_6SKF_0391/BA/344:351T-loop with 2 stacked bulged bases
homologous
HL_4V9F_010
HL_13999.3
HL_6SKF_0401/BA/358:362No text annotation
homologous
HL_4V9F_011
HL_75660.8
HL_6SKF_0411/BA/366:374T-loop with unstacked turn
homologous
HL_4V9F_012
HL_27670.4
HL_6SKF_0421/BA/423:432No text annotation
homologous
HL_4V9F_013
HL_91228.1
HL_6SKF_0431/BA/449:457Pseudoknot geometry
homologous
HL_4V9F_014
HL_52651.2
HL_6SKF_1081/BA/501:506GNRA
homologous
HL_4V9F_015
HL_34789.4
HL_6SKF_1091/BA/526:531GNRA
homologous
HL_4V9F_016
HL_34789.4
HL_6SKF_0461/BA/611:616GNRA
homologous
HL_4V9F_017
HL_34789.4
HL_6SKF_1101/BA/657:666T-loop with 2 stacked bulged bases
homologous
HL_4V9F_018
HL_33597.3
HL_6SKF_0481/BA/704:710No text annotation
homologous
HL_4V9F_019
HL_42293.1
HL_6SKF_0491/BA/724:729GNRA
homologous
HL_4V9F_020
HL_34789.4
HL_6SKF_1111/BA/768:773GNRA
homologous
HL_4V9F_022
HL_34789.4
HL_6SKF_0521/BA/839:844No text annotation
geometric
HL_4WF9_007
HL_51020.2
HL_6SKF_1121/BA/872:881No text annotation
homologous
HL_4V9F_024
HL_50204.1
HL_6SKF_0541/BA/907:913No text annotation
homologous
HL_4V9F_025
HL_92935.1
HL_6SKF_0551/BA/954:959No text annotation
homologous
HL_4V9F_026
HL_27530.1
HL_6SKF_1131/BA/1085:1090GNRA
homologous
HL_4V9F_028
HL_34789.4
HL_6SKF_1141/BA/1106:1113No text annotation
homologous
HL_4V9F_029
HL_47171.1
HL_6SKF_1151/BA/1305:1310No text annotation
geometric
HL_7KI3_001
HL_75660.8
HL_6SKF_1161/BA/1357:1362GNRA
homologous
HL_4V9F_033
HL_34789.4
HL_6SKF_0611/BA/1417:1425T-loop with 2 stacked bulged bases
homologous
HL_4V9F_034
HL_33597.3
HL_6SKF_0621/BA/1460:1466Pseudoknot geometry with 3' bulge
homologous
HL_4V9F_035
HL_49081.1
HL_6SKF_0631/BA/1498:1504GNRA
homologous
HL_4V9F_036
HL_34789.4
HL_6SKF_0641/BA/1527:1536No text annotation
homologous
HL_4V9F_037
HL_77449.1
HL_6SKF_1171/BA/1558:1563GNRA
geometric
HL_5TBW_030
NA
HL_6SKF_0661/BA/1604:1610No text annotation
geometric
HL_5U3G_001
HL_75660.8
HL_6SKF_1181/BA/1641:1647Other HL
homologous
HL_4V9F_039
HL_67772.1
HL_6SKF_0681/BA/1679:1686No text annotation
HL_6SKF_0691/BA/1710:1714Mini UNCG
homologous
HL_4V9F_041
HL_90436.3
HL_6SKF_0701/BA/1757:1764No text annotation
homologous
HL_4V9F_042
HL_28592.2
HL_6SKF_1191/BA/1776:1782GNRA
geometric
HL_5TBW_042
NA
HL_6SKF_0721/BA/1839:1844UNCG
homologous
HL_4V9F_044
HL_61337.4
HL_6SKF_0731/BA/1864:1870GNRA
homologous
HL_4V9F_045
HL_34789.4
HL_6SKF_0741/BA/1880:1884No text annotation
homologous
HL_4V9F_046
HL_80709.5
HL_6SKF_1201/BA/1905:1915No text annotation
homologous
HL_4V9F_047
HL_87681.1
HL_6SKF_1211/BA/1934:1939GNRA
homologous
HL_4V9F_048
HL_34789.4
HL_6SKF_0771/BA/1988:1995GNRA related
homologous
HL_4V9F_049
HL_92598.1
HL_6SKF_0781/BA/2023:2033No text annotation
geometric
HL_9DFE_046
HL_82185.1
HL_6SKF_0791/BA/2063:2069Mini UNCG
geometric
HL_5T16_002
HL_12626.2
HL_6SKF_0801/BA/2139:2148No text annotation
homologous
HL_4V9F_052
HL_78372.1
HL_6SKF_0821/BA/2316:2321GNRA
homologous
HL_4V9F_054
HL_34789.4
HL_6SKF_0831/BA/2350:2358No text annotation
homologous
HL_4V9F_055
HL_11974.2
HL_6SKF_1221/BA/2367:2379No text annotation
HL_6SKF_0861/BA/2427:2434Pseudoknot geometry
homologous
HL_4V9F_058
HL_52651.2
HL_6SKF_0871/BA/2459:2467No text annotation
geometric
HL_5J7L_185
NA
HL_6SKF_0881/BA/2480:2485GNRA
homologous
HL_4V9F_060
HL_34789.4
HL_6SKF_0891/BA/2511:2519Pseudoknot geometry
homologous
HL_4V9F_061
HL_52651.2
HL_6SKF_0901/BA/2575:2583No text annotation
homologous
HL_4V9F_062
HL_52011.1
HL_6SKF_0911/BA/2632:2639GNRA variation
homologous
HL_4V9F_063
HL_46665.2
HL_6SKF_0921/BA/2654:2662No text annotation
homologous
HL_4V9F_064
NA
HL_6SKF_0931/BA/2698:2703GNRA
homologous
HL_4V9F_065
HL_34789.4
HL_6SKF_0941/BA/2763:2768GNRA
homologous
HL_4V9F_066
HL_34789.4
HL_6SKF_0951/BA/2805:2810Ribsomal LSU H95
homologous
HL_4V9F_067
HL_12125.2
HL_6SKF_0961/BA/2847:2861No text annotation
homologous
HL_4V9F_068
HL_53269.2
HL_6SKF_0971/BA/2945:2953No text annotation
homologous
HL_4V9F_069
HL_37889.1
HL_6SKF_0981/BA/2986:2991GNRA
homologous
HL_4V9F_070
HL_34789.4
HL_6SKF_0991/BB/34:48No text annotation
homologous
HL_5J7L_215
NA
HL_6SKF_1001/BB/90:95GNRA
homologous
HL_5TBW_186
NA

Problematic loops

#loop idProblemSequence
HL_6SKF_002No text annotation
HL_6SKF_004No text annotation
HL_6SKF_010No text annotation
HL_6SKF_015No text annotation
HL_6SKF_019No text annotation
HL_6SKF_025No text annotation
HL_6SKF_026No text annotation
HL_6SKF_028No text annotation
HL_6SKF_033No text annotation
HL_6SKF_044tRNA anticodon loop
HL_6SKF_045GNRA with extra near cWW
HL_6SKF_047No text annotation
HL_6SKF_050No text annotation
HL_6SKF_051GNRA wlth tandem sheared
HL_6SKF_053No text annotation
HL_6SKF_056No text annotation
HL_6SKF_057GNRA with extra cWW
HL_6SKF_058No text annotation
HL_6SKF_059No text annotation
HL_6SKF_060GNRA with extra near cWW
HL_6SKF_065GNRA with extra cWW
HL_6SKF_067tRNA D-loop
HL_6SKF_071GNRA wlth tandem sheared
HL_6SKF_075No text annotation
HL_6SKF_076No text annotation
HL_6SKF_081No text annotation
HL_6SKF_084No text annotation
HL_6SKF_085No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6SKF_0031/Aa/42:48,
1/Aa/347:349		No text annotation
IL_6SKF_2301/Aa/50:52,
1/Aa/344:345		No text annotation
IL_6SKF_0051/Aa/59:62,
1/Aa/82:83		No text annotation
IL_6SKF_0061/Aa/63:65,
1/Aa/79:81		No text annotation
IL_6SKF_0071/Aa/108:111,
1/Aa/219:220		No text annotation
IL_6SKF_0081/Aa/112:116,
1/Aa/215:218		No text annotation
IL_6SKF_0091/Aa/128:133,
1/Aa/148:154		No text annotation
IL_6SKF_0111/Aa/170:172,
1/Aa/181:182		No text annotation
IL_6SKF_0131/Aa/230:235,
1/Aa/265:272		No text annotation
IL_6SKF_2311/Aa/237:240,
1/Aa/262:263		No text annotation
IL_6SKF_2321/Aa/280:281,
1/Aa/292:296		No text annotation
IL_6SKF_2331/Aa/355:357,
1/Aa/380:381		No text annotation
IL_6SKF_0191/Aa/359:363,
1/Aa/377:378		No text annotation
IL_6SKF_0201/Aa/363:364,
1/Aa/375:377		No text annotation
IL_6SKF_0231/Aa/448:455,
1/Aa/485:486		No text annotation
IL_6SKF_2341/Aa/455:457,
1/Aa/484:485		No text annotation
IL_6SKF_0251/Aa/460:466,
1/Aa/473:481		No text annotation
IL_6SKF_0261/Aa/514:520,
1/Aa/830:831		No text annotation
IL_6SKF_0271/Aa/524:529,
1/Aa/703:708		No text annotation
IL_6SKF_0291/Aa/539:541,
1/Aa/590:591		No text annotation
IL_6SKF_0301/Aa/542:543,
1/Aa/586:589		No text annotation
IL_6SKF_0311/Aa/550:556,
1/Aa/574:579		No text annotation
IL_6SKF_2351/Aa/600:601,
1/Aa/697:700		No text annotation
IL_6SKF_0341/Aa/603:604,
1/Aa/693:695		No text annotation
IL_6SKF_0361/Aa/606:612,
1/Aa/686:691		No text annotation
IL_6SKF_2361/Aa/620:623,
1/Aa/659:662		No text annotation
IL_6SKF_0391/Aa/630:634,
1/Aa/645:652		No text annotation
IL_6SKF_0411/Aa/720:724,
1/Aa/750:751		No text annotation
IL_6SKF_0421/Aa/725:729,
1/Aa/745:749		No text annotation
IL_6SKF_0451/Aa/837:844,
1/Aa/855:860		No text annotation
IL_6SKF_0471/Aa/872:873,
1/Aa/1345:1347		No text annotation
IL_6SKF_2371/Aa/875:877,
1/Aa/1342:1343		No text annotation
IL_6SKF_0481/Aa/883:886,
1/Aa/1332:1336		No text annotation
IL_6SKF_0501/Aa/904:905,
1/Aa/1178:1180		No text annotation
IL_6SKF_0521/Aa/959:961,
1/Aa/973:975		No text annotation
IL_6SKF_2381/Aa/992:994,
1/Aa/1160:1161		No text annotation
IL_6SKF_0541/Aa/996:1000,
1/Aa/1156:1158		No text annotation
IL_6SKF_2391/Aa/1001:1002,
1/Aa/1151:1155		No text annotation
IL_6SKF_2401/Aa/1004:1005,
1/Aa/1147:1149		No text annotation
IL_6SKF_0571/Aa/1017:1030,
1/Aa/1043:1046		No text annotation
IL_6SKF_0581/Aa/1068:1071,
1/Aa/1097:1101		No text annotation
IL_6SKF_2711/Aa/1073:1076,
1/Aa/1094:1095		No text annotation
IL_6SKF_0601/Aa/1110:1113,
1/Aa/1127:1133		No text annotation
IL_6SKF_2411/Aa/1110:1115,
1/Aa/1125:1133		No text annotation
IL_6SKF_0611/Aa/1199:1205,
1/Aa/1236:1242		No text annotation
IL_6SKF_0621/Aa/1207:1210,
1/Aa/1229:1234		No text annotation
IL_6SKF_0631/Aa/1211:1214,
1/Aa/1225:1228		No text annotation
IL_6SKF_0641/Aa/1255:1260,
1/Aa/1281:1286		No text annotation
IL_6SKF_0661/Aa/1351:1353,
1/Aa/1450:1453		No text annotation
IL_6SKF_0671/Aa/1353:1356,
1/Aa/1446:1450		No text annotation
IL_6SKF_0681/Aa/1357:1359,
1/Aa/1443:1445		No text annotation
IL_6SKF_2421/Aa/1359:1361,
1/Aa/1440:1443		No text annotation
IL_6SKF_0701/Aa/1364:1366,
1/Aa/1435:1437		No text annotation
IL_6SKF_0721/Aa/1368:1371,
1/Aa/1430:1433		No text annotation
IL_6SKF_0731/Aa/1383:1386,
1/Aa/1415:1418		No text annotation
IL_6SKF_2431/BA/34:39,
1/BA/547:552		No text annotation
geometric
IL_4V88_462
NA
IL_6SKF_0781/BA/45:46,
1/BA/481:483		Single bulged A
homologous
IL_4V9F_002
IL_14190.2
IL_6SKF_0791/BA/48:50,
1/BA/478:479		Minor groove platform
geometric
IL_4V88_454
NA
IL_6SKF_0801/BA/52:53,
1/BA/474:476		Minor groove platform related
geometric
IL_3K0J_002
IL_34520.3
IL_6SKF_0811/BA/90:94,
1/BA/106:113		Kink-turn
homologous
IL_4V9F_004
IL_71972.1
IL_6SKF_0821/BA/174:175,
1/BA/203:205		Single stack bend
homologous
IL_4V9F_005
IL_15011.3
IL_6SKF_0841/BA/179:185,
1/BA/192:199		8x7 Sarcin-Ricin; G-bulge
homologous
IL_4V9F_006
IL_62167.3
IL_6SKF_2441/BA/230:236,
1/BA/244:249		7x6 Sarcin-Ricin; G-bulge
homologous
IL_4V9F_007
IL_02666.1
IL_6SKF_0871/BA/265:268,
1/BA/295:296		Major groove platform; stack outside cWW
homologous
IL_4V9F_008
IL_74641.2
IL_6SKF_2451/BA/265:269,
1/BA/290:296		Kink-turn with embedded cWW pair
geometric
IL_4V9F_108
IL_65996.1
IL_6SKF_2461/BA/268:269,
1/BA/290:295		No text annotation
homologous
IL_4V9F_009
IL_10396.1
IL_6SKF_0891/BA/307:308,
1/BA/406:408		Single bulged U
geometric
IL_6UFG_004
IL_97561.5
IL_6SKF_0901/BA/308:309,
1/BA/404:406		Single stack bend
geometric
IL_4C7O_002
IL_15011.3
IL_6SKF_0911/BA/312:317,
1/BA/398:401		No text annotation
IL_6SKF_0921/BA/320:322,
1/BA/393:395		Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_68118.4
IL_6SKF_0931/BA/322:324,
1/BA/392:393		Minor groove platform
geometric
IL_7A0S_028
IL_34520.3
IL_6SKF_0941/BA/329:333,
1/BA/382:387		Triple sheared related
geometric
IL_4V9F_018
IL_67427.1
IL_6SKF_0951/BA/339:341,
1/BA/354:355		Single bulged U
geometric
IL_4V9F_013
IL_97561.5
IL_6SKF_0991/BA/520:523,
1/BA/534:546		No text annotation
geometric
IL_4WF9_015
IL_44923.1
IL_6SKF_1021/BA/579:584,
1/BA/640:642		No text annotation
geometric
IL_9E6Q_019
IL_93336.1
IL_6SKF_1031/BA/585:592,
1/BA/635:639		Kink-turn
geometric
IL_4CS1_002
NA
IL_6SKF_1041/BA/598:602,
1/BA/626:629		UAA/GAN variation
geometric
IL_5J7L_303
NA
IL_6SKF_1051/BA/602:607,
1/BA/620:626		7x6 Sarcin-Ricin; G-bulge
geometric
IL_4V9F_106
IL_02666.1
IL_6SKF_2481/BA/697:701,
1/BA/713:717		AAA cross-strand stack
homologous
IL_4V9F_020
IL_66798.3
IL_6SKF_1111/BA/733:736,
1/BA/761:762		Multiple bulged bases
homologous
IL_4V9F_021
IL_71421.3
IL_6SKF_2491/BA/739:743,
1/BA/754:758		tSH-tHW-tHS
homologous
IL_4V9F_022
IL_05821.1
IL_6SKF_2501/BA/798:800,
1/BA/934:936		Isolated non-canonical cWW pair
homologous
IL_4V9F_023
IL_01003.4
IL_6SKF_2511/BA/800:804,
1/BA/927:934		tHW-tHW cross-strand stack
homologous
IL_4V9F_024
IL_73855.1
IL_6SKF_1151/BA/823:824,
1/BA/891:893		Single bulged A
homologous
IL_4V9F_025
IL_14190.2
IL_6SKF_1161/BA/828:829,
1/BA/854:856		Single bulged G
geometric
IL_4V9F_026
IL_28408.2
IL_6SKF_2521/BA/829:833,
1/BA/850:854		Triple sheared
homologous
IL_4V9F_027
IL_15190.2
IL_6SKF_1181/BA/865:868,
1/BA/884:886		Major groove platform with extra cWW
homologous
IL_4V9F_028
IL_36931.2
IL_6SKF_2531/BA/869:871,
1/BA/882:883		Single bulged U
homologous
IL_4V9F_029
IL_97561.5
IL_6SKF_1191/BA/903:905,
1/BA/915:919		Multiple bulged bases
geometric
IL_4V9F_030
IL_57881.1
IL_6SKF_1211/BA/965:966,
1/BA/1071:1073		Single stack bend
geometric
IL_7A0S_022
IL_15011.3
IL_6SKF_1221/BA/971:975,
1/BA/1059:1066		Kink-turn
homologous
IL_4V9F_031
IL_94910.1
IL_6SKF_1231/BA/977:979,
1/BA/1056:1057		Single bulged A
homologous
IL_4V9F_032
IL_14190.2
IL_6SKF_1241/BA/987:991,
1/BA/1044:1048		5x5 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_4V9F_033
IL_38862.5
IL_6SKF_1251/BA/991:992,
1/BA/1042:1044		Minor groove platform
geometric
IL_4V9F_034
IL_34520.3
IL_6SKF_1261/BA/993:997,
1/BA/1038:1041		C-loop
geometric
IL_7A0S_029
IL_16301.1
IL_6SKF_1271/BA/999:1002,
1/BA/1033:1036		No text annotation
homologous
IL_4V9F_036
IL_02203.1
IL_6SKF_2551/BA/1007:1012,
1/BA/1026:1028		No text annotation
IL_6SKF_1291/BA/1079:1080,
1/BA/1095:1097		Major groove platform
geometric
IL_4V9F_082
IL_48076.8
IL_6SKF_1301/BA/1125:1129,
1/BA/1285:1289		UAA/GAN
homologous
IL_4V9F_037
IL_08938.1
IL_6SKF_1311/BA/1131:1138,
1/BA/1282:1283		SSU/LSU pseudoknot
homologous
IL_4V9F_038
IL_11411.1
IL_6SKF_1321/BA/1138:1140,
1/BA/1281:1282		Single bulged U
geometric
IL_4V9F_039
IL_97561.5
IL_6SKF_1331/BA/1145:1151,
1/BA/1271:1276		Kink-turn related
homologous
IL_4V9F_040
IL_57188.6
IL_6SKF_2561/BA/1152:1162,
1/BA/1256:1270		No text annotation
IL_6SKF_1341/BA/1164:1166,
1/BA/1253:1254		Single bulged G
homologous
IL_4V9F_041
IL_28408.2
IL_6SKF_1351/BA/1175:1184,
1/BA/1239:1244		No text annotation
IL_6SKF_1371/BA/1297:1298,
1/BA/1317:1320		Bulged stacked bases
homologous
IL_4V9F_045
IL_72211.1
IL_6SKF_1381/BA/1332:1334,
1/BA/1382:1385		Isolated cWS basepair
homologous
IL_4V9F_046
IL_42997.5
IL_6SKF_1411/BA/1343:1350,
1/BA/1369:1373		Kink-turn
homologous
IL_4V9F_048
IL_90775.2
IL_6SKF_2571/BA/1398:1404,
1/BA/2124:2129		7x6 Sarcin-Ricin; G-bulge
homologous
IL_4V9F_049
IL_02666.1
IL_6SKF_1441/BA/1446:1449,
1/BA/1748:1749		Major groove platform; stack outside cWW
geometric
IL_4V9F_050
IL_74641.2
IL_6SKF_1461/BA/1455:1459,
1/BA/1467:1469		C-loop
homologous
IL_4V9F_051
IL_63596.12
IL_6SKF_1471/BA/1486:1490,
1/BA/1513:1518		UAA/GAN
geometric
IL_5TBW_063
NA
IL_6SKF_1481/BA/1495:1496,
1/BA/1506:1508		Minor groove platform
geometric
IL_4LFB_054
IL_34520.3
IL_6SKF_1511/BA/1550:1553,
1/BA/1731:1735		tSH-tHW
geometric
IL_7RQB_011
NA
IL_6SKF_1521/BA/1590:1593,
1/BA/1697:1701		tSH-tHW
geometric
IL_7RQB_057
NA
IL_6SKF_1541/BA/1616:1620,
1/BA/1668:1673		No text annotation
geometric
IL_5TBW_071
NA
IL_6SKF_1551/BA/1623:1628,
1/BA/1660:1665		No text annotation
geometric
IL_9E6Q_072
IL_74322.2
IL_6SKF_1561/BA/1633:1639,
1/BA/1649:1655		No text annotation
geometric
IL_9E6Q_060
IL_93476.1
IL_6SKF_1581/BA/1798:1804,
1/BA/2117:2119		No text annotation
IL_6SKF_1601/BA/1811:1813,
1/BA/2108:2110		Isolated tWW turn
homologous
IL_4V9F_060
IL_10432.1
IL_6SKF_1611/BA/1814:1817,
1/BA/2106:2107		Major groove platform; stack outside cWW
geometric
IL_4V9F_061
IL_74641.2
IL_6SKF_2581/BA/1814:1822,
1/BA/2103:2107		No text annotation
homologous
IL_4V9F_111
IL_80252.1
IL_6SKF_1621/BA/1817:1822,
1/BA/2103:2106		Intercalated tWH
homologous
IL_4V9F_062
IL_28217.1
IL_6SKF_1631/BA/1834:1839,
1/BA/1844:1850		tSH-tSH-tHH-tHS
geometric
IL_5TBW_078
NA
IL_6SKF_2591/BA/1898:1899,
1/BA/2093:2095		Single bulged A
homologous
IL_4V9F_064
IL_14190.2
IL_6SKF_1661/BA/1926:1931,
1/BA/1942:1949		No text annotation
IL_6SKF_2601/BA/1965:1968,
1/BA/2015:2016		Minor groove platform, major groove intercalation
homologous
IL_4V9F_066
IL_55206.1
IL_6SKF_2611/BA/1969:1970,
1/BA/2011:2014		Major groove intercalation
homologous
IL_4V9F_067
IL_71421.3
IL_6SKF_1701/BA/1974:1977,
1/BA/2006:2007		Major groove minor groove platform; mini C-loop
homologous
IL_4V9F_068
IL_73108.2
IL_6SKF_1711/BA/1979:1983,
1/BA/2000:2004		UAA/GAN with extra stack
geometric
IL_7RQB_074
NA
IL_6SKF_2621/BA/2047:2058,
1/BA/2074:2077		No text annotation
geometric
IL_8VTW_076
NA
IL_6SKF_1761/BA/2162:2164,
1/BA/2721:2722		Major groove platform
geometric
IL_5J7L_320
NA
IL_6SKF_2631/BA/2166:2168,
1/BA/2716:2719		No text annotation
homologous
IL_4V9F_073
IL_80025.1
IL_6SKF_1781/BA/2179:2181,
1/BA/2546:2547		Single bulged U
geometric
IL_4V9F_074
IL_97561.5
IL_6SKF_2641/BA/2182:2183,
1/BA/2542:2545		Minor groove platform
homologous
IL_4V9F_075
IL_34520.3
IL_6SKF_1801/BA/2193:2195,
1/BA/2338:2341		Isolated tHS basepair with bulges
homologous
IL_4V9F_076
IL_87316.2
IL_6SKF_1851/BA/2236:2239,
1/BA/2273:2286		No text annotation
IL_6SKF_1861/BA/2241:2250,
1/BA/2265:2271		No text annotation
IL_6SKF_1891/BA/2348:2349,
1/BA/2359:2361		Single bulged A
homologous
IL_4V9F_079
IL_14190.2
IL_6SKF_2651/BA/2386:2400,
1/BA/2424:2428		No text annotation
IL_6SKF_1901/BA/2400:2402,
1/BA/2420:2424		Isolated tHS basepair with bulges
geometric
IL_5TBW_099
NA
IL_6SKF_2661/BA/2429:2431,
1/BA/2493:2495		No text annotation
IL_6SKF_1911/BA/2448:2450,
1/BA/2476:2477		Single bulged A
geometric
IL_4V88_399
NA
IL_6SKF_1931/BA/2505:2507,
1/BA/2523:2524		Single stack bend
homologous
IL_4V9F_081
IL_15011.3
IL_6SKF_2671/BA/2558:2559,
1/BA/2600:2602		Major groove platform
homologous
IL_4V9F_082
IL_48076.8
IL_6SKF_1961/BA/2561:2563,
1/BA/2597:2598		Major groove platform
geometric
IL_4V9F_083
IL_46637.2
IL_6SKF_1971/BA/2563:2565,
1/BA/2593:2597		Major groove minor groove platform with extra cWW
homologous
IL_4V9F_084
IL_36931.2
IL_6SKF_1981/BA/2570:2574,
1/BA/2584:2588		Double sheared with non-canonical cWW
homologous
IL_4V9F_085
IL_87767.2
IL_6SKF_1991/BA/2611:2612,
1/BA/2684:2686		Major groove platform
homologous
IL_4V9F_086
IL_46637.2
IL_6SKF_2001/BA/2614:2616,
1/BA/2678:2682		Isolated non-canonical cWW with bulges
geometric
IL_7RQB_097
NA
IL_6SKF_2011/BA/2616:2617,
1/BA/2675:2678		Multiple bulged bases
homologous
IL_4V9F_088
IL_44609.2
IL_6SKF_2031/BA/2626:2627,
1/BA/2644:2647		Major groove platform with intercalation
homologous
IL_4V9F_089
IL_94991.2
IL_6SKF_2051/BA/2695:2696,
1/BA/2705:2707		Single bulged A
geometric
IL_1CSL_002
IL_14190.2
IL_6SKF_2061/BA/2740:2744,
1/BA/2876:2884		No text annotation
geometric
IL_4V9F_091
IL_04638.4
IL_6SKF_2081/BA/2756:2763,
1/BA/2768:2774		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5TBW_116
NA
IL_6SKF_2101/BA/2785:2789,
1/BA/2828:2830		C-loop
homologous
IL_4V9F_093
IL_63596.12
IL_6SKF_2111/BA/2792:2796,
1/BA/2821:2825		UAA/GAN variation
homologous
IL_4V9F_094
IL_45790.2
IL_6SKF_2131/BA/2800:2801,
1/BA/2814:2817		Multiple bulged bases
geometric
IL_5J7L_349
NA
IL_6SKF_2151/BA/2839:2844,
1/BA/2864:2869		UAA/GAN with extra cWW
homologous
IL_4V9F_096
IL_91079.1
IL_6SKF_2681/BA/2934:2937,
1/BA/3023:3026		Double sheared
geometric
IL_4V9F_100
IL_58355.2
IL_6SKF_2191/BA/2964:2965,
1/BA/3012:3014		Single bulged C
geometric
IL_7RQB_108
NA
IL_6SKF_2211/BA/2969:2970,
1/BA/3006:3008		Single bulged A
homologous
IL_4V9F_098
IL_14190.2
IL_6SKF_2221/BA/2973:2978,
1/BA/2999:3003		tHS double platform
homologous
IL_4V9F_099
IL_48489.1
IL_6SKF_2691/BA/2982:2985,
1/BA/2992:2995		Double sheared
homologous
IL_4V9F_100
IL_58355.2
IL_6SKF_2701/BB/3:5,
1/BB/121:122		Single bulged A
geometric
IL_4V88_409
NA
IL_6SKF_2261/BB/17:18,
1/BB/65:67		Major groove intercalation
homologous
IL_7RQB_111
NA
IL_6SKF_2271/BB/23:31,
1/BB/51:60		No text annotation
IL_6SKF_2281/BB/76:82,
1/BB/102:107		7x6 Sarcin-Ricin; G-bulge
homologous
IL_4V9F_106
IL_02666.1
IL_6SKF_2291/BB/87:89,
1/BB/96:97		Single bulged U
homologous
IL_4V9F_107
IL_97561.5

Problematic loops

#loop idProblemSequence
IL_6SKF_001No text annotation
IL_6SKF_002No text annotation
IL_6SKF_004No text annotation
IL_6SKF_010No text annotation
IL_6SKF_012No text annotation
IL_6SKF_014No text annotation
IL_6SKF_015No text annotation
IL_6SKF_016No text annotation
IL_6SKF_017No text annotation
IL_6SKF_018No text annotation
IL_6SKF_021No text annotation
IL_6SKF_022No text annotation
IL_6SKF_024No text annotation
IL_6SKF_028No text annotation
IL_6SKF_032No text annotation
IL_6SKF_033No text annotation
IL_6SKF_035No text annotation
IL_6SKF_037No text annotation
IL_6SKF_038No text annotation
IL_6SKF_040No text annotation
IL_6SKF_043No text annotation
IL_6SKF_044No text annotation
IL_6SKF_046No text annotation
IL_6SKF_049No text annotation
IL_6SKF_051No text annotation
IL_6SKF_053No text annotation
IL_6SKF_055No text annotation
IL_6SKF_056No text annotation
IL_6SKF_059No text annotation
IL_6SKF_065No text annotation
IL_6SKF_069No text annotation
IL_6SKF_071No text annotation
IL_6SKF_074No text annotation
IL_6SKF_075No text annotation
IL_6SKF_076Isolated non-canonical cWW pair
IL_6SKF_077Triple sheared with non-canonical cWW
IL_6SKF_083Isolated non-canonical cWW pair
IL_6SKF_085Isolated non-canonical cWW pair
IL_6SKF_086No text annotation
IL_6SKF_088No text annotation
IL_6SKF_247No text annotation
IL_6SKF_096Isolated non-canonical cWW pair
IL_6SKF_097Tandem non-canonical cWW pairs
IL_6SKF_098Isolated non-canonical cWW pair
IL_6SKF_100Isolated non-canonical cWW pair
IL_6SKF_101Isolated non-canonical cWW pair
IL_6SKF_106Isolated non-canonical cWW pair
IL_6SKF_107Isolated non-canonical cWW pair
IL_6SKF_108Isolated non-canonical cWW pair
IL_6SKF_109Isolated non-canonical cWW pair
IL_6SKF_110No text annotation
IL_6SKF_112tSH-tHW-tHS-cWW
IL_6SKF_113No text annotation
IL_6SKF_114Tandem non-canonical cWW pairs
IL_6SKF_117No text annotation
IL_6SKF_120Not an internal loop
IL_6SKF_254No text annotation
IL_6SKF_128No text annotation
IL_6SKF_136Single stack bend
IL_6SKF_139Isolated non-canonical cWW pair
IL_6SKF_140Tandem non-canonical cWW pairs
IL_6SKF_1429x8 Sarcin-Ricin; G-bulge
IL_6SKF_143Isolated non-canonical cWW pair
IL_6SKF_145Isolated non-canonical cWW pair
IL_6SKF_149Isolated non-canonical cWW pair
IL_6SKF_150Isolated non-canonical cWW pair
IL_6SKF_153Isolated non-canonical cWW pair
IL_6SKF_157Isolated non-canonical cWW pair
IL_6SKF_159Isolated non-canonical cWW pair
IL_6SKF_164Isolated non-canonical cWW pair
IL_6SKF_165Isolated non-canonical cWW pair
IL_6SKF_167No text annotation
IL_6SKF_168No text annotation
IL_6SKF_169Isolated non-canonical cWW pair
IL_6SKF_172Isolated non-canonical cWW pair
IL_6SKF_173Isolated non-canonical cWW pair
IL_6SKF_174Isolated non-canonical cWW pair
IL_6SKF_175Isolated non-canonical cWW pair
IL_6SKF_177No text annotation
IL_6SKF_179Tandem non-canonical cWW pairs
IL_6SKF_272Single stack bend
IL_6SKF_181No text annotation
IL_6SKF_182No text annotation
IL_6SKF_183Single stack bend
IL_6SKF_184No text annotation
IL_6SKF_187Single stack bend
IL_6SKF_188Isolated non-canonical cWW pair
IL_6SKF_192Isolated non-canonical cWW pair
IL_6SKF_194Isolated cWH basepair
IL_6SKF_195No text annotation
IL_6SKF_202Isolated non-canonical cWW pair
IL_6SKF_204Isolated non-canonical cWW pair
IL_6SKF_207Isolated non-canonical cWW pair
IL_6SKF_209Isolated non-canonical cWW pair
IL_6SKF_212Isolated non-canonical cWW pair
IL_6SKF_214Isolated non-canonical cWW pair
IL_6SKF_216Isolated cWH basepair
IL_6SKF_217No text annotation
IL_6SKF_218Isolated non-canonical cWW pair
IL_6SKF_220Isolated non-canonical cWW pair
IL_6SKF_223Isolated non-canonical cWW pair
IL_6SKF_224No text annotation
IL_6SKF_225Other IL

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6SKF_0251/Aa/41:42,
1/Aa/349:355,
1/Aa/381:383		No text annotation
J3_6SKF_0261/Aa/41:48,
1/Aa/347:355,
1/Aa/381:383		No text annotation
J3_6SKF_0021/Aa/531:533,
1/Aa/597:600,
1/Aa/700:701		No text annotation
J3_6SKF_0271/Aa/531:533,
1/Aa/597:601,
1/Aa/697:701		No text annotation
J3_6SKF_0031/Aa/618:619,
1/Aa/663:671,
1/Aa/678:680		No text annotation
J3_6SKF_0281/Aa/772:775,
1/Aa/807:811,
1/Aa/818:824		No text annotation
J3_6SKF_0291/Aa/887:890,
1/Aa/1296:1303,
1/Aa/1323:1331		No text annotation
J3_6SKF_0051/Aa/894:897,
1/Aa/1187:1189,
1/Aa/1289:1292		No text annotation
J3_6SKF_0301/Aa/906:913,
1/Aa/924:935,
1/Aa/1173:1177		No text annotation
J3_6SKF_0071/Aa/941:946,
1/Aa/986:991,
1/Aa/1162:1167		No text annotation
J3_6SKF_0311/Aa/1007:1012,
1/Aa/1051:1056,
1/Aa/1140:1145		No text annotation
J3_6SKF_0321/Aa/1017:1019,
1/Aa/1026:1030,
1/Aa/1043:1046		No text annotation
J3_6SKF_0331/Aa/1060:1062,
1/Aa/1107:1110,
1/Aa/1133:1136		No text annotation
J3_6SKF_0341/Aa/1060:1062,
1/Aa/1107:1115,
1/Aa/1125:1136		No text annotation
J3_6SKF_0101/Aa/1189:1193,
1/Aa/1248:1255,
1/Aa/1286:1289		No text annotation
J3_6SKF_0111/BA/39:40,
1/BA/513:520,
1/BA/546:547		No text annotation
geometric
J3_4V9F_011
J3_68715.1
J3_6SKF_0351/BA/39:40,
1/BA/513:523,
1/BA/534:547		No text annotation
geometric
J3_4WF9_011
J3_17917.1
J3_6SKF_0361/BA/41:44,
1/BA/484:500,
1/BA/507:512		No text annotation
homologous
J3_4V9F_013
J3_07616.1
J3_6SKF_0121/BA/65:66,
1/BA/79:85,
1/BA/118:122		No text annotation
homologous
J3_4V9F_014
J3_01004.1
J3_6SKF_0131/BA/302:304,
1/BA/411:417,
1/BA/438:443		No text annotation
J3_6SKF_0371/BA/335:339,
1/BA/355:364,
1/BA/376:380		No text annotation
geometric
J3_8VTW_041
NA
J3_6SKF_0141/BA/809:815,
1/BA/901:903,
1/BA/919:922		No text annotation
homologous
J3_4V9F_002
J3_46658.1
J3_6SKF_0381/BA/824:826,
1/BA/858:863,
1/BA/888:891		No text annotation
homologous
J3_4V9F_003
J3_69816.1
J3_6SKF_0391/BA/1434:1439,
1/BA/1771:1773,
1/BA/1785:1788		No text annotation
geometric
J3_4V9F_006
J3_76012.1
J3_6SKF_0401/BA/1441:1445,
1/BA/1750:1756,
1/BA/1765:1769		No text annotation
J3_6SKF_0411/BA/1480:1485,
1/BA/1519:1523,
1/BA/1540:1541		No text annotation
homologous
J3_4V9F_016
J3_94309.1
J3_6SKF_0181/BA/1553:1556,
1/BA/1565:1569,
1/BA/1728:1731		No text annotation
J3_6SKF_0421/BA/1578:1582,
1/BA/1709:1710,
1/BA/1714:1719		No text annotation
homologous
J3_4V9F_017
J3_08594.1
J3_6SKF_0191/BA/2203:2205,
1/BA/2308:2312,
1/BA/2325:2330		No text annotation
geometric
J3_7A0S_009
J3_17460.1
J3_6SKF_0201/BA/2385:2387,
1/BA/2490:2503,
1/BA/2526:2533		No text annotation
J3_6SKF_0211/BA/2398:2400,
1/BA/2424:2426,
1/BA/2435:2440		No text annotation
homologous
J3_4V9F_008
J3_05327.1
J3_6SKF_0431/BA/2433:2448,
1/BA/2477:2478,
1/BA/2487:2491		No text annotation
J3_6SKF_0221/BA/2621:2624,
1/BA/2649:2652,
1/BA/2664:2671		No text annotation
homologous
J3_4V9F_009
J3_68010.1
J3_6SKF_0231/BA/2940:2941,
1/BA/2957:2962,
1/BA/3016:3020		No text annotation
homologous
J3_4V9F_019
J3_76911.2
J3_6SKF_0241/BB/11:16,
1/BB/68:71,
1/BB/112:115		No text annotation
J4_6SKF_0011/Aa/94:102,
1/Aa/226:228,
1/Aa/274:277,
1/Aa/299:300		No text annotation
J4_6SKF_0021/Aa/122:124,
1/Aa/158:162,
1/Aa/190:196,
1/Aa/207:209		No text annotation
J4_6SKF_0031/Aa/514:522,
1/Aa/710:714,
1/Aa/757:767,
1/Aa/829:831		No text annotation
J4_6SKF_0041/BA/259:264,
1/BA/297:302,
1/BA/443:445,
1/BA/461:464		No text annotation
J4_6SKF_0051/BA/335:339,
1/BA/355:358,
1/BA/362:364,
1/BA/376:380		No text annotation
J4_6SKF_0061/BA/1405:1412,
1/BA/1430:1431,
1/BA/1791:1795,
1/BA/2122:2123		No text annotation
homologous
J4_4V9F_003
J4_75426.1
J4_6SKF_0071/BA/1446:1450,
1/BA/1474:1479,
1/BA/1542:1543,
1/BA/1742:1749		No text annotation
homologous
J4_4V9F_004
J4_77353.1
J4_6SKF_0081/BA/1449:1450,
1/BA/1474:1479,
1/BA/1542:1543,
1/BA/1742:1748		No text annotation
homologous
J4_4V9F_005
J4_48150.1
J4_6SKF_0091/BA/1598:1599,
1/BA/1615:1616,
1/BA/1673:1674,
1/BA/1691:1692		No text annotation
homologous
J4_4V9F_006
J4_75575.1
J4_6SKF_0101/BA/1900:1904,
1/BA/1916:1920,
1/BA/1955:1958,
1/BA/2088:2092		No text annotation
J4_6SKF_0111/BA/1961:1963,
1/BA/2018:2019,
1/BA/2037:2047,
1/BA/2077:2085		No text annotation
J4_6SKF_0121/BA/2385:2386,
1/BA/2428:2429,
1/BA/2495:2501,
1/BA/2528:2533		No text annotation
J4_6SKF_0131/BA/2747:2750,
1/BA/2780:2781,
1/BA/2834:2836,
1/BA/2872:2873		No text annotation
J5_6SKF_0011/Aa/30:33,
1/Aa/391:394,
1/Aa/412:417,
1/Aa/437:444,
1/Aa/490:493		No text annotation
J5_6SKF_0021/Aa/54:57,
1/Aa/85:92,
1/Aa/302:304,
1/Aa/325:327,
1/Aa/338:342		No text annotation
J5_6SKF_0031/BA/56:63,
1/BA/124:129,
1/BA/138:139,
1/BA/152:154,
1/BA/167:169		No text annotation
J5_6SKF_0041/BA/259:264,
1/BA/297:304,
1/BA/411:417,
1/BA/438:445,
1/BA/461:464		No text annotation
J5_6SKF_0051/BA/568:570,
1/BA/651:654,
1/BA/669:670,
1/BA/1396:1397,
1/BA/2130:2131		No text annotation
J5_6SKF_0061/BA/675:680,
1/BA/794:797,
1/BA/937:940,
1/BA/1331:1332,
1/BA/1385:1391		No text annotation
homologous
J5_4V9F_003
J5_15067.1
J5_6SKF_0071/BA/692:695,
1/BA/719:723,
1/BA/730:733,
1/BA/762:763,
1/BA/778:782		No text annotation
homologous
J5_4V9F_004
J5_43592.1
J5_6SKF_0081/BA/692:695,
1/BA/719:723,
1/BA/730:736,
1/BA/761:763,
1/BA/778:782		No text annotation
homologous
J5_4V9F_005
J5_63867.1
J5_6SKF_0091/BA/1822:1830,
1/BA/1854:1855,
1/BA/1879:1880,
1/BA/1884:1892,
1/BA/2101:2103		No text annotation
homologous
J5_4V9F_006
J5_99177.1
J5_6SKF_0101/BA/2169:2176,
1/BA/2550:2558,
1/BA/2602:2610,
1/BA/2687:2692,
1/BA/2710:2715		No text annotation
J5_6SKF_0111/BA/2186:2189,
1/BA/2345:2348,
1/BA/2361:2362,
1/BA/2384:2385,
1/BA/2533:2539		No text annotation
homologous
J5_4V9F_008
J5_96125.1
J6_6SKF_0011/BA/54:55,
1/BA/170:174,
1/BA/205:215,
1/BA/222:226,
1/BA/253:257,
1/BA/466:473		No text annotation
J7_6SKF_0011/BA/945:950,
1/BA/963:965,
1/BA/1073:1077,
1/BA/1099:1104,
1/BA/1115:1119,
1/BA/1295:1296,
1/BA/1321:1326		No text annotation

Problematic loops

#loop idProblemSequence
J3_6SKF_001No text annotation
J3_6SKF_004No text annotation
J3_6SKF_006No text annotation
J3_6SKF_008No text annotation
J3_6SKF_009No text annotation
J3_6SKF_015No text annotation
J3_6SKF_016No text annotation
J3_6SKF_017No text annotation

Coloring options:
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