HL_6SKF_026

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

G(OMG)CUGCAACUC(OMG)(5MC)C

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|G|1264
6SKF|1|Aa|OMG|1265
6SKF|1|Aa|C|1266
6SKF|1|Aa|U|1267
6SKF|1|Aa|G|1268
6SKF|1|Aa|C|1269
6SKF|1|Aa|A|1270
6SKF|1|Aa|A|1271
6SKF|1|Aa|C|1272
6SKF|1|Aa|U|1273
6SKF|1|Aa|C|1274
6SKF|1|Aa|OMG|1275
6SKF|1|Aa|5MC|1276
6SKF|1|Aa|C|1277

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain Ap

30S ribosomal protein S13

Chain Ar

30S ribosomal protein S14 type Z

Chain Au

30S ribosomal protein S19

Chain Av

30S ribosomal protein S19e