HL_6SKF_030
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- UGGCAAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6SKF_030 not in the Motif Atlas
- Homologous match to HL_4V9F_001
- Geometric discrepancy: 0.1389
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6SKF|1|BA|U|68
6SKF|1|BA|G|69
6SKF|1|BA|G|70
6SKF|1|BA|C|71
6SKF|1|BA|A|72
6SKF|1|BA|A|73
6SKF|1|BA|G|74
6SKF|1|BA|C|75
6SKF|1|BA|U|76
6SKF|1|BA|G|77
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain BW
- 50S ribosomal protein L23
- Chain BZ
- 50S ribosomal protein L29
- Chain Bi
- 50S ribosomal protein L39e
Coloring options: