HL_6SKF_040

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGGAG

Length

5 nucleotides

Bulged bases

6SKF|1|BA|G|360, 6SKF|1|BA|A|361

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6SKF_040 not in the Motif Atlas

Homologous match to HL_4V9F_011

Geometric discrepancy: 0.2029

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6SKF|1|BA|C|358
6SKF|1|BA|G|359
6SKF|1|BA|G|360
6SKF|1|BA|A|361
6SKF|1|BA|G|362

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4